Topics
math
stats
policy
DRUG
jekyll
voting
grand-canyon
trade-offs
ecobloggers
- Early Warning Signals: the Charted and Uncharted Territories
- I try to figure out when many trees will die together
- Quals Reading: Modeling Philosophy
likelihood
optimization
publication
tutorials
quals
- A Draft Dissertation Proposal: Forest Disease Dynamics and Management
- Quals Reading: Sudden Oak Death
- Quals Reading: Modeling Philosophy
- Quals Reading: Modeling Philosophy
- Quals Reading: Four Reviews of Forest Epidemiology
- Qualifying Exam Reading List
ECL290
SCB
papers
xts
SOD
- The null model for age effects with overdispersed infection
- A Null Model for Age Effects in Disease with Multiple Infections
- A Draft Dissertation Proposal: Forest Disease Dynamics and Management
- I try to figure out when many trees will die together
- Quals Reading: Sudden Oak Death
- Quals Reading: Four Reviews of Forest Epidemiology
- Qualifying Exam Reading List
- A multi-species, age-structured model for forest disease
- Simulating Sudden Oak Death Dynamics
igert
IGERT
adaptive-management
- Carl Walters on Surprises in Adaptive Management at the Grand Canyon
- Holly Doremus on Adaptive Management
Rstudio
knitr
history
- Multiple Goals in Floodplain Restoration - Workshop Notes
- Trade-Offs and Synergies in Floodplain Management - A Historical-Ecological Approach
lectures
- Jordi Bascompte on Mutualistic Networks
- Melinda D. Smith: Divergence in grassland responses to Fire and Grazing in N. America and S. Africa
- Carl Walters on Surprises in Adaptive Management at the Grand Canyon
- Jo Albers on Invasive Species in a River Network
- Holly Doremus on Adaptive Management
economics
- My first peer-reviewed publication: Economics and Ecology of Open-Access Fisheries
- Jo Albers on Invasive Species in a River Network
bbmle
video
mathjax
notes
- A multi-species, age-structured model for forest disease
- Jordi Bascompte on Mutualistic Networks
- Ecological Stoichiometry: Population Dynamics
- Dynamics of Coupled Nutrient Cycling and Acclimation: 3 Modeling Papers
- Ecological Stoichiometry: The Perils of Famine and Plenty
- Multiple Goals in Floodplain Restoration - Workshop Notes
blog
ggplot
poster
seminars
code
- Debugging Tools in R with Michael Hannon
- A quick function for editing CSV files in R
- Displaying Math in RSS feeds
GAMs
rss
D-RUG
- Robert Hijmans on Spatial Data Analysis
- FasteR! HigheR! StrongeR! - A Guide to Speeding Up R Code for Busy People
- Debugging Tools in R with Michael Hannon
- Demographic analysis using the `popbio` library and some other fun stuff
- Model Selection and Multi-Model Inference
- Mason Earles on interfacing R with the Forest Vegetation Simulator
- Ryan Peek on using xts and ggplot for time-series data
- Steve Culman on the `plyr` Package
- Don't R alone! A guide to tools for collaboration with R
- Exploring GAMs with Rosemary Hartman
- Ryan Peek on Customizing Your R Setup
- Chris Hamm on using plot.new() for better combined plots
- Stella Copeland's Intro to Mixed Models in R
- A quick introduction to ggplot()
hackery
early-swarning-signals
plotting
statistics
lecture
pollen
plyr
matrix-models
- Demographic analysis using the `popbio` library and some other fun stuff
- Lauren Yamane on Matrix Population Models in R
epidemiology
open-access
- Setting up Automated Reprint Requests in Gmail
- My first peer-reviewed publication: Economics and Ecology of Open-Access Fisheries
FVS
upgoer5
regime-shifts
class
- Ecological Stoichiometry: Population Dynamics
- Dynamics of Coupled Nutrient Cycling and Acclimation: 3 Modeling Papers
- Ecological Stoichiometry: The Perils of Famine and Plenty
invasive-species
diseases
R
- Printing R help files in the console or in knitr documents
- Dave Harris on Maximum Likelihood Estimation
- The null model for age effects with overdispersed infection
- A Null Model for Age Effects in Disease with Multiple Infections
- Robert Hijmans on Spatial Data Analysis
- Improved R Profiling Summaries
- FasteR! HigheR! StrongeR! - A Guide to Speeding Up R Code for Busy People
- Debugging Tools in R with Michael Hannon
- Demographic analysis using the `popbio` library and some other fun stuff
- Model Selection and Multi-Model Inference
- Mason Earles on interfacing R with the Forest Vegetation Simulator
- Ryan Peek on using xts and ggplot for time-series data
- Steve Culman on the `plyr` Package
- Don't R alone! A guide to tools for collaboration with R
- Lauren Yamane on Matrix Population Models in R
- A quick function for editing CSV files in R
- Simulating Sudden Oak Death Dynamics
- Exploring GAMs with Rosemary Hartman
- Ryan Peek on Customizing Your R Setup
- Chris Hamm on using plot.new() for better combined plots
- Stella Copeland's Intro to Mixed Models in R
- A quick introduction to ggplot()
- An R Users' Group in Davis
- Exploring Pollen Data
tools
mixedmodels
fisheries
modeling
forests
- Mason Earles on interfacing R with the Forest Vegetation Simulator
- Quals Reading: Four Reviews of Forest Epidemiology
- Qualifying Exam Reading List
- A multi-species, age-structured model for forest disease
- Forest Ecology Journals
- Regime Shifts in Forest Ecosystems
early-warnings
general
- A New, Shiny Website!
- Links and Resources
- Extinction debt, dark diversity, and how things are much worse than they look
- Can Novel Ecosystems Do the Job of "Natural" Ones?
- Climate Change and Credit Risk in the Chemicals Sector
- Delving into the Green Economy Report
- Of Billabongs, Weevils, and Alternative Stable States
- Tipping Points and the Precautionary Principle
- My article on rural abandonment and ecosystem services at GOOD
- George Sugihara on Early Warnings
- Jellyfish and Ocean Tipping Points
- REDD+ and Financial Resilience for Conservation
- Preparing for unexpected opportunities in Borneo
- Tackling investor risk in forest restoration
- Managing New Invasion Risks from Biofuel Crops
- Good environmental management lowers cost of borrowing
- Fishing for metrics
- Apparently, there's nothing left to learn about ecosystem services
- PricewaterhouseCoopers gets into the ecosystem services game
- What do we do with forecasts of the future?
- Thinking about TEEB
- New approaches to looking at water-related financial risks
- Reading philosophy can get you down
- Why the carbon market needs ecologists
- Saving more than species at Nagoya
- Liability for stolen ecosystem services
- Does ecology tell us that some species are worth more than others?
- Measuring resilience to climate-change driven crop failure
- In honeybee collapse, cure the patient, not just the disease.
- Rapid evolution as a warning sign
- Harmful algal blooms highlight risks from cascading ecological collapse
- Payments for ecosystem services are great, unless we do them enough to make a difference
- A species is priceless - does that mean that it is worth nothing or everything?
- Risk, Insurance, LUST, and Fish
- Money Quote
- In the News: Hysteresis in Coral Reefs
- Species in a Bucket
networks
theory
population-dynamics
stoichiometry
- Ecological Stoichiometry: Population Dynamics
- Dynamics of Coupled Nutrient Cycling and Acclimation: 3 Modeling Papers
- Ecological Stoichiometry: The Perils of Famine and Plenty
- Seminar in Ecological Stoichiometry: Day 1
workshop
model
dynamics
ecology
fish
open-lab-notebook
- Notes on S-maps and regime shifts
- Jan 17
- January 10, 2012
- Back in the Saddle January 9, 2012
- Forest Pest Outbreaks - A Bibliography
- Pollen project sources
- Monday, November 28, 2011
stoichiometry class notes
github
floodplains
- Multiple Goals in Floodplain Restoration - Workshop Notes
- Trade-Offs and Synergies in Floodplain Management - A Historical-Ecological Approach